HGVbaseG2P - Study Report

Study Report - GWAS of sporadic amyotrophic lateral sclerosis (HGVST375)

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Markers in Resultset: HGVRS704

Phenotype: Determination of amyotrophic lateral sclerosis

Experiment: Two-stage amyotrophic lateral sclerosis association analysis - discovery and replication samples (HGVE686)

Resultset: Association test using logistic regression (HGVRS704)

Rank	Identifier	Accession	Region	Unadjusted P value	Related Links
1	HGVM1167174	rs2708909	7:48018204..48018204	6.98e-07	Not supplied
2	HGVM1167966	rs2708851	7:48052327..48052327	1.16e-06	Not supplied
3	HGVM8750864	rs9682388	3:72437256..72437256	1.18e-06	Not supplied
4	HGVM215338	rs329174	5:125160022..125160022	2.1e-06	Not supplied
5	HGVM5175728	rs12531117	7:147684732..147684732	2.46e-06	Not supplied
6	HGVM3094808	rs10231383	7:131035760..131035760	6.43e-06	Not supplied
7	HGVM218998	rs388910	5:125165492..125165492	8.59e-06	Not supplied
8	HGVM1165847	rs2686821	7:47941607..47941607	1.12e-05	Not supplied
9	HGVM1165857	rs2686831	7:47959511..47959511	1.17e-05	Not supplied
10	HGVM2499421	rs4331786	4:38445803..38445803	1.6e-05	Not supplied
11	HGVM2602660	rs4543123	4:38468919..38468919	1.84e-05	Not supplied
12	HGVM17476140	rs16888247	6:23988337..23988337	1.9e-05	Not supplied
13	HGVM7053119	rs6723108	2:135196450..135196450	1.93e-05	Not supplied
14	HGVM3804635	rs11096957	4:38452886..38452886	2.64e-05	Not supplied
15	HGVM19083251	rs16847561	1:225536172..225536172	2.69e-05	Not supplied
16	HGVM8257737	rs7996488	13:97876811..97876811	2.72e-05	Not supplied
17	HGVM8215583	rs7954206	12:32735973..32735973	2.95e-05	Not supplied
18	HGVM4621413	rs11976442	7:90689258..90689258	3.12e-05	Not supplied
19	HGVM5110073	rs12465555	2:43971693..43971693	3.27e-05	Not supplied
20	HGVM3477711	rs10771984	12:32742684..32742684	3.27e-05	Not supplied
21	HGVM3550496	rs10844309	12:32751024..32751024	3.32e-05	Not supplied
22	HGVM2879862	rs4954647	2:139575672..139575672	3.62e-05	Not supplied
23	HGVM306641	rs1263556	7:157169221..157169221	3.7e-05	Not supplied
24	HGVM3656560	rs10949810	7:155797305..155797305	3.85e-05	Not supplied
25	HGVM7281588	rs6963218	7:90690568..90690568	3.93e-05	Not supplied
26	HGVM1306110	rs1240751	11:44465962..44465962	4.37e-05	Not supplied
27	HGVM7225388	rs6903608	6:32536263..32536263	4.47e-05	Not supplied
28	HGVM2000255	rs2099575	2:139583024..139583024	4.55e-05	Not supplied
29	HGVM1357530	rs2274058	13:97867381..97867381	4.59e-05	Not supplied
30	HGVM3479687	rs10773943	12:1380766..1380766	4.7e-05	Not supplied
31	HGVM5314049	rs12669177	7:151820728..151820728	5.14e-05	Not supplied
32	HGVM1090990	rs1424894	5:51725772..51725772	5.29e-05	Not supplied
33	HGVM306635	rs1263550	7:157163173..157163173	5.33e-05	Not supplied
34	HGVM3842069	rs11134152	5:6325266..6325266	5.6e-05	Not supplied
35	HGVM2922137	rs10024216	4:38440507..38440507	5.67e-05	Not supplied
36	HGVM6860857	rs6488076	12:32716154..32716154	5.8e-05	Not supplied
37	HGVM3832834	rs11124960	2:44069214..44069214	6.23e-05	Not supplied
38	HGVM8074901	rs7809443	7:90698287..90698287	6.3e-05	Not supplied
39	HGVM8644964	rs9542987	13:71983014..71983014	8.31e-05	Not supplied
40	HGVM2793697	rs4833095	4:38476105..38476105	8.59e-05	Not supplied
41	HGVM8320592	rs8059665	16:83020690..83020690	9.56e-05	Not supplied
42	HGVM1087110	rs469226	5:160548576..160548576	9.66e-05	Not supplied
43	HGVM4402061	rs11757520	6:24008314..24008314	0.000102	Not supplied
44	HGVM6653615	rs5999264	22:20425920..20425920	0.000105	Not supplied
45	HGVM5189605	rs12544976	8:10616482..10616482	0.000108	Not supplied
46	HGVM16037	rs9352	19:4393336..4393336	0.000111	Not supplied
47	HGVM513840	rs243372	19:4383973..4383973	0.000115	Not supplied
48	HGVM2084763	rs2342207	1:73931180..73931180	0.000127	Not supplied
49	HGVM662496	rs2034849	5:116177898..116177898	0.000129	Not supplied
50	HGVM2456557	rs4242557	8:114681719..114681719	0.000129	Not supplied

Markers in Resultset: HGVRS705

Phenotype: Determination of amyotrophic lateral sclerosis

Experiment: Amyotrophic lateral sclerosis association analysis - US cases and controls (HGVE687)

Resultset: Association test using logistic regression (HGVRS705)

Rank	Identifier	Accession	Region	Unadjusted P value	Related Links
1	HGVM7281588	rs6963218	7:90690568..90690568	2.35e-05	Not supplied
2	HGVM1167966	rs2708851	7:48052327..48052327	2.61e-05	Not supplied
3	HGVM4621413	rs11976442	7:90689258..90689258	5.25e-05	Not supplied
4	HGVM1167174	rs2708909	7:48018204..48018204	5.4e-05	Not supplied
5	HGVM218998	rs388910	5:125165492..125165492	7.34e-05	Not supplied
6	HGVM215338	rs329174	5:125160022..125160022	0.000172	Not supplied
7	HGVM3221891	rs10498472	14:54424619..54424619	0.000187	Not supplied
8	HGVM3094808	rs10231383	7:131035760..131035760	0.000292	Not supplied
9	HGVM1807895	rs950971	7:45542440..45542440	0.000472	Not supplied
10	HGVM4676155	rs12031180	1:208719308..208719308	0.000555	Not supplied
11	HGVM3124075	rs10267413	7:115115076..115115076	0.000672	Not supplied
12	HGVM7265395	rs6946417	7:115162968..115162968	0.000688	Not supplied
13	HGVM6840865	rs6466555	7:115149783..115149783	0.000694	Not supplied
14	HGVM1165847	rs2686821	7:47941607..47941607	0.000762	Not supplied
15	HGVM8074901	rs7809443	7:90698287..90698287	0.00124	Not supplied
16	HGVM1165857	rs2686831	7:47959511..47959511	0.00139	Not supplied
17	HGVM3656560	rs10949810	7:155797305..155797305	0.00155	Not supplied
18	HGVM6647705	rs5992838	22:16644831..16644831	0.00198	Not supplied
19	HGVM8750864	rs9682388	3:72437256..72437256	0.00232	Not supplied
20	HGVM16037	rs9352	19:4393336..4393336	0.00258	Not supplied
21	HGVM1090990	rs1424894	5:51725772..51725772	0.00291	Not supplied
22	HGVM6800910	rs6421967	11:973966..973966	0.00306	Not supplied
23	HGVM2456557	rs4242557	8:114681719..114681719	0.0033	Not supplied
24	HGVM6850816	rs6477190	9:7371520..7371520	0.00346	Not supplied
25	HGVM1416636	rs2410427	17:73072165..73072165	0.00356	Not supplied
26	HGVM7844436	rs7577449	2:208475230..208475230	0.00361	Not supplied
27	HGVM1087110	rs469226	5:160548576..160548576	0.00365	Not supplied
28	HGVM1504196	rs1443341	8:114722557..114722557	0.00419	Not supplied
29	HGVM3079425	rs10211770	20:53830198..53830198	0.00502	Not supplied
30	HGVM5175728	rs12531117	7:147684732..147684732	0.00507	Not supplied
31	HGVM8257737	rs7996488	13:97876811..97876811	0.0052	Not supplied
32	HGVM513840	rs243372	19:4383973..4383973	0.0054	Not supplied
33	HGVM5129901	rs12485363	3:125737128..125737128	0.00665	Not supplied
34	HGVM6843627	rs6469464	8:114713028..114713028	0.00677	Not supplied
35	HGVM3242895	rs10519856	5:125201023..125201023	0.00682	Not supplied
36	HGVM1446865	rs2854501	19:48751841..48751841	0.00693	Not supplied
37	HGVM19083251	rs16847561	1:225536172..225536172	0.00694	Not supplied
38	HGVM4968437	rs12323683	14:62899422..62899422	0.00804	Not supplied
39	HGVM8859860	rs9876606	3:3406858..3406858	0.00834	Not supplied
40	HGVM159976	rs1430408	3:157972203..157972203	0.00928	Not supplied
41	HGVM8848772	rs9863574	3:3408694..3408694	0.00999	Not supplied
42	HGVM1951770	rs1933488	6:153482772..153482772	0.0102	Not supplied
43	HGVM2879862	rs4954647	2:139575672..139575672	0.0108	Not supplied
44	HGVM2000255	rs2099575	2:139583024..139583024	0.0119	Not supplied
45	HGVM5228165	rs12583470	13:41014714..41014714	0.0126	Not supplied
46	HGVM3842069	rs11134152	5:6325266..6325266	0.0146	Not supplied
47	HGVM958573	rs1006703	17:3812148..3812148	0.015	Not supplied
48	HGVM2315477	rs3825776	15:56534122..56534122	0.0162	Not supplied
49	HGVM8965624	rs9998681	4:77941021..77941021	0.0165	Not supplied
50	HGVM2084763	rs2342207	1:73931180..73931180	0.0183	Not supplied

Markers in Resultset: HGVRS706

Phenotype: Determination of amyotrophic lateral sclerosis

Experiment: Amyotrophic lateral sclerosis association analysis - Italian cases and controls (HGVE688)

Resultset: Association test using logistic regression (HGVRS706)

Rank	Identifier	Accession	Region	Unadjusted P value	Related Links
1	HGVM2602660	rs4543123	4:38468919..38468919	1.68e-07	Not supplied
2	HGVM7225388	rs6903608	6:32536263..32536263	4.26e-07	Not supplied
3	HGVM3804635	rs11096957	4:38452886..38452886	8.67e-07	Not supplied
4	HGVM2499421	rs4331786	4:38445803..38445803	8.98e-07	Not supplied
5	HGVM8215583	rs7954206	12:32735973..32735973	1.63e-06	Not supplied
6	HGVM3477711	rs10771984	12:32742684..32742684	1.76e-06	Not supplied
7	HGVM6380789	rs4895298	5:120597007..120597007	2.12e-06	Not supplied
8	HGVM3550496	rs10844309	12:32751024..32751024	3.09e-06	Not supplied
9	HGVM2922137	rs10024216	4:38440507..38440507	3.63e-06	Not supplied
10	HGVM2793697	rs4833095	4:38476105..38476105	3.8e-06	Not supplied
11	HGVM6860857	rs6488076	12:32716154..32716154	4.95e-06	Not supplied
12	HGVM6832503	rs6457536	6:32381743..32381743	5.41e-06	Not supplied
13	HGVM17476140	rs16888247	6:23988337..23988337	5e-05	Not supplied
14	HGVM853167	rs1447576	11:45667228..45667228	6.04e-05	Not supplied
15	HGVM1326051	rs2666895	11:45667606..45667606	8.99e-05	Not supplied
16	HGVM4171197	rs11466640	4:38455298..38455298	0.000132	Not supplied
17	HGVM10345316	rs9503977	6:420154..420154	0.000136	Not supplied
18	HGVM1599020	rs3130320	6:32331236..32331236	0.000138	Not supplied
19	HGVM1306110	rs1240751	11:44465962..44465962	0.000224	Not supplied
20	HGVM3479687	rs10773943	12:1380766..1380766	0.00025	Not supplied
21	HGVM8965624	rs9998681	4:77941021..77941021	0.000297	Not supplied
22	HGVM4264401	rs11620127	13:98521082..98521082	0.000342	Not supplied
23	HGVM4402061	rs11757520	6:24008314..24008314	0.000346	Not supplied
24	HGVM698891	rs949425	7:141724336..141724336	0.000504	Not supplied
25	HGVM2883059	rs4959273	6:420810..420810	0.000505	Not supplied
26	HGVM776478	rs947211	1:204019288..204019288	0.000575	Not supplied
27	HGVM1167174	rs2708909	7:48018204..48018204	0.00061	Not supplied
28	HGVM5175728	rs12531117	7:147684732..147684732	0.000638	Not supplied
29	HGVM3843072	rs11135148	5:160700941..160700941	0.000668	Not supplied
30	HGVM1824805	rs1061925	6:24773986..24773986	0.000688	Not supplied
31	HGVM5314049	rs12669177	7:151820728..151820728	0.000863	Not supplied
32	HGVM1167966	rs2708851	7:48052327..48052327	0.00112	Not supplied
33	HGVM1165857	rs2686831	7:47959511..47959511	0.00125	Not supplied
34	HGVM1826418	rs1076620	22:25985945..25985945	0.00126	Not supplied
35	HGVM1165847	rs2686821	7:47941607..47941607	0.00134	Not supplied
36	HGVM5392672	rs12748062	1:182228931..182228931	0.00146	Not supplied
37	HGVM677789	rs1342642	6:137364906..137364906	0.00151	Not supplied
38	HGVM6653615	rs5999264	22:20425920..20425920	0.00153	Not supplied
39	HGVM669704	rs725290	6:169948650..169948650	0.00159	Not supplied
40	HGVM1714677	rs1876294	15:88392475..88392475	0.00163	Not supplied
41	HGVM14033869	rs16967814	18:18324589..18324589	0.00166	Not supplied
42	HGVM3842069	rs11134152	5:6325266..6325266	0.00238	Not supplied
43	HGVM8257737	rs7996488	13:97876811..97876811	0.00254	Not supplied
44	HGVM5927261	rs13279614	8:25671940..25671940	0.00262	Not supplied
45	HGVM5253696	rs12608932	19:17613689..17613689	0.00283	Not supplied
46	HGVM2315477	rs3825776	15:56534122..56534122	0.00303	Not supplied
47	HGVM5189605	rs12544976	8:10616482..10616482	0.0031	Not supplied
48	HGVM7256707	rs6937197	6:169914241..169914241	0.00343	Not supplied
49	HGVM3558365	rs10852125	15:88386863..88386863	0.00416	Not supplied
50	HGVM8591700	rs9478112	6:169942006..169942006	0.00421	Not supplied

Markers in Resultset: HGVRS707

Phenotype: Determination of amyotrophic lateral sclerosis

Experiment: Amyotrophic lateral sclerosis association analysis - German cases and controls (HGVE689)

Resultset: Association test using logistic regression (HGVRS707)

Rank	Identifier	Accession	Region	Unadjusted P value	Related Links
1	HGVM3016447	rs10137819	14:100464694..100464694	0.000999	Not supplied
2	HGVM4264401	rs11620127	13:98521082..98521082	0.00697	Not supplied
3	HGVM1416636	rs2410427	17:73072165..73072165	0.00716	Not supplied
4	HGVM3137244	rs10283652	9:12086410..12086410	0.0108	Not supplied
5	HGVM2756012	rs4782624	16:83022667..83022667	0.0142	Not supplied
6	HGVM7853620	rs7586596	2:69472079..69472079	0.0149	Not supplied
7	HGVM8320592	rs8059665	16:83020690..83020690	0.0152	Not supplied
8	HGVM3832834	rs11124960	2:44069214..44069214	0.0159	Not supplied
9	HGVM8644964	rs9542987	13:71983014..71983014	0.0176	Not supplied
10	HGVM5283568	rs12638737	3:151418812..151418812	0.0181	Not supplied
11	HGVM2704702	rs4714572	6:42207349..42207349	0.0196	Not supplied
12	HGVM5971431	rs13323544	3:151418903..151418903	0.0198	Not supplied
13	HGVM5110073	rs12465555	2:43971693..43971693	0.0209	Not supplied
14	HGVM958573	rs1006703	17:3812148..3812148	0.0296	Not supplied
15	HGVM4878680	rs12233598	3:151417905..151417905	0.0355	Not supplied
16	HGVM7358182	rs7043331	9:12138057..12138057	0.0378	Not supplied
17	HGVM6800910	rs6421967	11:973966..973966	0.0394	Not supplied
18	HGVM8437916	rs9294331	6:86019189..86019189	0.0429	Not supplied
19	HGVM115969	rs817742	2:103094602..103094602	0.043	Not supplied
20	HGVM6058695	rs13410328	2:64685726..64685726	0.0492	Not supplied
21	HGVM1306110	rs1240751	11:44465962..44465962	0.0516	Not supplied
22	HGVM3558365	rs10852125	15:88386863..88386863	0.0542	Not supplied
23	HGVM6860857	rs6488076	12:32716154..32716154	0.0579	Not supplied
24	HGVM2793697	rs4833095	4:38476105..38476105	0.0588	Not supplied
25	HGVM1504196	rs1443341	8:114722557..114722557	0.0632	Not supplied
26	HGVM513840	rs243372	19:4383973..4383973	0.0641	Not supplied
27	HGVM4968437	rs12323683	14:62899422..62899422	0.0682	Not supplied
28	HGVM7827900	rs7560946	2:43974350..43974350	0.0692	Not supplied
29	HGVM306641	rs1263556	7:157169221..157169221	0.0704	Not supplied
30	HGVM6647705	rs5992838	22:16644831..16644831	0.0723	Not supplied
31	HGVM2456557	rs4242557	8:114681719..114681719	0.0752	Not supplied
32	HGVM7751150	rs7481521	11:1017811..1017811	0.0757	Not supplied
33	HGVM306635	rs1263550	7:157163173..157163173	0.0759	Not supplied
34	HGVM5115376	rs12470851	2:58106754..58106754	0.0759	Not supplied
35	HGVM218998	rs388910	5:125165492..125165492	0.08	Not supplied
36	HGVM384839	rs655050	11:86517029..86517029	0.0843	Not supplied
37	HGVM3550496	rs10844309	12:32751024..32751024	0.087	Not supplied
38	HGVM6843627	rs6469464	8:114713028..114713028	0.0888	Not supplied
39	HGVM7851653	rs7584646	2:215337567..215337567	0.0954	Not supplied
40	HGVM1714677	rs1876294	15:88392475..88392475	0.0976	Not supplied
41	HGVM7580678	rs7287557	22:26318228..26318228	0.102	Not supplied
42	HGVM215338	rs329174	5:125160022..125160022	0.106	Not supplied
43	HGVM1942958	rs1907218	10:122960206..122960206	0.111	Not supplied
44	HGVM8215583	rs7954206	12:32735973..32735973	0.111	Not supplied
45	HGVM6858602	rs6485532	11:44462774..44462774	0.114	Not supplied
46	HGVM2602660	rs4543123	4:38468919..38468919	0.116	Not supplied
47	HGVM3477711	rs10771984	12:32742684..32742684	0.116	Not supplied
48	HGVM369689	rs483373	11:86528131..86528131	0.122	Not supplied
49	HGVM3667333	rs10960522	9:12192003..12192003	0.131	Not supplied
50	HGVM1981313	rs2039197	9:123988867..123988867	0.146	Not supplied