HGVbaseG2P - Study Report

Study Report - GWAS of prostate cancer (HGVST1)

Bookmark..

Data access not provided HGVRS1,HGVRS3,HGVRS4,HGVRS7,HGVRS2,HGVRS5,HGVRS6,HGVRS8

Summary
Panels
Phenotypes
Analysis Experiments
Markers

The Study contains 2 Analysis Experiments. What is an Analysis Experiment info

Expand All minus

Collapse All

Experiment: HGVE3

Association analysis from WGAS Phase 1A (Illumina 317K).

Phenotype

Prostate cancer

Total No. Markers Imported

301,613

Analysis summary

Analysis Method	Result Set
Single selection sampling, Unadjusted score test	Single selection sampling, Unadjusted score test (HGVRS1)
Incidence density sampling, Adjusted score test	Incidence density sampling, Adjusted score test (HGVRS3)
Incidence density sampling, Unadjusted score test	Incidence density sampling, Unadjusted score test (HGVRS4)
Single selection sampling, Adjusted score test	Single selection sampling, Adjusted score test (HGVRS7)

Assayed Panels used in Experiment

Assayed Panel name	No. individuals	Selected from Sample Panel(s)
Case aggressive	737	CGEMS prostate cancer sub-cohort
Case non-aggressive	624	CGEMS prostate cancer sub-cohort
Control	1,230	CGEMS prostate cancer sub-cohort

Original data location

CGEMS Prostate Cancer WGAS 317K association analysis results link

Individual-level data statement

Individual genotype data will be available to registered users approved by the Data Access Committee (DAC) of CGEMS. See https://caintegrator.nci.nih.gov/cgems/remoteSetup.do?content=access for more info.

Comments

None

Experiment: HGVE4

Association analysis from WGAS Phase 1 (Illumina 317K and 240K).