Study Database

• 351 studies from the NHGRI GWAS Catalogue and the Open Access Database of Genome-wide Association Results
• 14 studies from dbGaP, WTCCC, Broad and CGEMS
• 7 studies from publications' supplementary data

Click here for the full list of studies.

Marker Database
Marker data from dbSNP build 129 (18,045,285 entries)

HGVmart is not available at the moment for the reasons outlined here.

Text dumps of the studies in HGVbaseG2P study are available on our FTP downloads area.

The Distributed Annotation System (DAS) is a standard technology by which datasets can be transferred to remote sites to be integrated with other datasets and visualised on a genome browser. For the time being we have de-activated our DAS server for the reasons outlined here

HGVbaseG2P

  Release 3.2 - July 12th 2010
    Internet Explorer Phenotype tree browser fix.
	
  Release 3.1 - June 29th 2010
    Minor bug-fixes, including incompatibility fixes for Internet Explorer.
	
  Release 3 - June 8th 2010
    Complete web site redesign.
    Gene/region based study and marker search.
    Phenotype ontology browser and term matching.
    Improved navigation and bookmarkable tabs.
    Exportable search and report data as feeds or files.
   
  Release 2.2.1 - December 18th 2009:
    HGMD® data added as a track to the Browser, within the region view. 
    
  Release 2.2 - September 4th 2009:
    New marker reports containing p-value association data from single studies and/or user selected studies

  Release 2.1 - July 17th 2009: 
    Non-cosmetic web site refinements including faster search

  Release 2 - May 19th 2009:
    Integrated new Browser for comparing and contrasting positive/negative signals in multiple studies.

  Release 1.2 - September 10th 2008:
    Additional features in the visualisation tools including log/linear scales and improved gene display.    

  Release 1.1 - August 20th 2008:
    HGVmart data mining service enabled.
    New genome viewer and analysis tool for G2P datasets.
    DAS support enabled.

  Release 1 - July 1st 2008:
    Database and website completely redesigned to incorporate G2P data

HGVbaseG2P

  Release 6 - June 8th 2010:
	145 additional GWA studies. More Details..
	
  Release 5 - December 18th 2009:
    60 new GWA studies from the GWAS catalog 
    7 additional GWA studies added using marker data from supplementary data 
    
  Release 4 - July 1st 2009:
    Additional 186 GWAS studies from the GWAS catalog 

  Release 3 - May 19th 2009:
    Over 100 GWAS studies added from the NHGRI GWAS catalog and the Open Access Database of genome-wide association results

  Release 2 - August 20th 2008:
    8 new genome-wide association studies added from the WTCCC and dbGaP    

  Release 1 - July 1st 2008:
    GWA data for 5 disease phenotypes imported from 6 G2P studies	

HGVbaseG2P

  Release 17.0 - July 1st 2008:
    18,045,285 total marker records (update to dbSNP b129)

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HGVbase

  Release 16.0 - January 2004: 8,924,237 records
  Over 6,000,000 new records added
  New datasets - SNP data from dbSNP119

  Release 15.0 - July 23rd 2003: 2,859,130 records
    Over 1,150,000 new records added 
    New datasets - SNP data from dbSNP111 and co-ordinate information uses NCBI 33 assembly

  Release 14.0 - December 17th 2002: 1,702,845 records
    Over 251,000 new records added.
    Output enhanced with haplotype data.
    Functional predictions for non synonymous (ns) SNPs.
    Warnings of "low quality" data (Duplicon, Repeat, MultiplyMapped).

  Release 13.0 - March 27th 2002: 1,451,426 records
    Over 467,000 new records added.
    Output enhanced with additional gene co-ordinate information from Ensembl

  Release 12.0 - November 2nd 2001: 984,093 records
    Over 238,000 new records added.

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HGBASE

  Release 11.0 - October 5th 2001: 746,006 records
    Over 214,000 new records added.
    Output format enhanced with MESH terms and links to Pubmed abstracts for all records with a literature source.

  Release 10.0 - July 12th 2001: 531,850 records
    Over 6100 new records added.
    Output format enhanced with additional hotlinks.

  Release 9.0 - May 11th 2001: 525,690 records
    Many new records including initial exchange with dbSNP.

  Release 8.0 - November 1st 2000: 62907 records
    Over 1300 new records added

  Release 7.3 - May 19th 2000: 61598 records
    Corrected the way variation type 'Tandem Repeat' is treated. The fix affects DTD, XML, FASTA and DAT files. 

  Release 7.2 - May 15th 2000: 61598 records
    Corrected minor bugs in XML file element names. A bug affecting allele frequency values was corrected and 
    more comments were added into the downloadable flat-file.

  Release 7.1 - May 12th 2000: 61598 records
    Corrected wrongly ordered allele data in the downloadable flat-file.

  Release 7.0 - May 10th 2000: 61598 records
    Over 54000 new records added
    Curation information added for each record

  Release 6.0 - February 7th 2000: 6688 records
    First release by the new KI/EBI/EMBL HGVbase consortium
    Database completely redesigned, 100 new records added, redundancy eliminated

  Release 5.0 - September 10th 1999: 6974 records
    Over 2000 new records added

  Release 4.0 - July 13th 1999: 4522 records
    Over 1200 new records added

  Release 3.1 - May 7th 1999: 3220 records
    Missing and additional population sample sizes added

  Release 3.0 - March 3rd 1999: 3220 records
    Over 600 new records added, some redundancy removed

  Release 2.1 - February 12th 1999: 2617 records
    PCR related data removed

  Release 2.0 - January 20th 1999: 2617 records
    Over 250 new records added, some redundancy removed

  Release 1.0 - August 25th: 1998: 2349 records